By Andreas Gogol-Döring
An Easy-to-Use examine instrument for set of rules checking out and Development
Before the SeqAn venture, there has been essentially a scarcity of obtainable implementations in series research, even for traditional projects. Implementations of wanted algorithmic elements have been both unavailable or not easy to entry in third-party monolithic software program items. Addressing those issues, the builders of SeqAn created a accomplished, easy-to-use, open resource C++ library of effective algorithms and knowledge constructions for the research of organic sequences. Written by means of the founders of this venture, Biological series research utilizing the SeqAn C++ Library covers the SeqAn library, its documentation, and the assisting infrastructure.
The first a part of the ebook describes the final library layout. It introduces organic series research difficulties, discusses the good thing about utilizing software program libraries, summarizes the layout rules and objectives of SeqAn, information the most programming ideas utilized in SeqAn, and demonstrates the appliance of those ideas in numerous examples. targeting the parts supplied by means of SeqAn, the second one half explores simple performance, series info buildings, alignments, development and motif looking, string indices, and graphs. The final half illustrates purposes of SeqAn to genome alignment, consensus series in meeting tasks, suffix array building, and more.
This convenient e-book describes a easy library of effective facts kinds and algorithms for series research in computational biology. SeqAn permits not just the implementation of latest algorithms, but additionally the sound research and comparability of latest algorithms.
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